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Dev tools · August 27, 2014

NE

Nucleotid.es – benchmarking bioinformatics software using docker

continuous, objective and reproducible evaluation of genome assemblers using docker containers

Nucleotid.es – benchmarking bioinformatics software using docker launched on August 27, 2014 with 6 votes and more than 50% of that year's launches. The site was still online in September 2026, 12 years on.

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What it does

Compare how different genome assemblers perform against a variety of test sequence data. Multiple different benchmarks shows the average performance of each assembler. Measured metrics include the size or accuracy of the assembly. Benchmarks include different %GC content and genome sizes. Choose the assembler that best suits your own requirements and data. Every genome assembler is examined as a self-contained Docker application. These containers eliminate the common problem in bioinformatics where the software won't compile or requires multiple additional dependencies. Everything needed to run the assembler is included in the container. You can pull an assembler from the docker repository…from nucleotid.es

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