Cute tricks for SIMD vectorized binary encoding of nucleotides in Rust
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust. - Daniel-Liu-c0deb0t/cute-nucleotides
Cute tricks for SIMD vectorized binary encoding of nucleotides in Rust launched on July 28, 2020 with 5 votes, #1,626 of 4,305 launches that month and more than 50% of that year's launches. The site was still online in September 2026, 6 years on.
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SIMD Viterbi Decoder in RustAug 2026 · github.com · ▲64I wrote libcorrect in C in 2016 and wanted to revisit it in Rust. Instead of doing just a direct conversion, I went down the rabbit hole of making Rust's std::simd work for me. I ended up with a templated, generic Viterbi decoder for convolutional codes that dispatches the decode at runtime depending on which instruction sets are available. For small rates and orders, the entire decode lives in registers. Larger codes work through memory but take advantage of some acceleration structures. I also spent some time building a tool to find optimal (max d_free) conv codes for a given rate and…
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Serialization framework with some interesting numbers: 10-20x faster on nested objects than json/protobuf. Technical approach: compile-time codegen (no reflection), compact binary protocol with meta-packing, little-endian layout optimized for modern CPUs. Unique features that other fast serializers don't have: - Cross-language without IDL files (Rust ↔ Python/Java/Go) - Trait object serialization (Box) - Automatic circular reference handling - Schema evolution without coordination Happy to discuss design trade-offs. Benchmarks:…
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