OakVar MCP Server

What it does

Explore genome annotation results with Claude Desktop, ChatGPT, and Gemini with a local MCP server. Ask questions in plain language without uploading data.

Connect OakVar results to Claude Desktop, ChatGPT, and Gemini with a secure local MCP server. Ask questions in plain language without uploading data.

We will send only essential setup info and important updates. We never share your email with anybody else. Select your OakVar executable and the result database you want to explore. The app auto-detects your OakVar installation to speed things up. Start the MCP server. For Claude Desktop, copy the generated config. For web-based LLMs, use the local URL or a secure tunnel. Ask questions in natural language. "What are the pathogenic variants in this sample?" "Summarize the findings for Gene X." * Your OakVar annotation data never leaves your local machine. That said, if your questions require variant-level detail, those details may be included in queries sent to LLMs like ChatGPT, Claude, or…from oakbioinformatics.com

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